一个sratoolkit的报错
想到Linux中~
和$HOME
的区别这个问题,是因为在集群上安装了sratoolkit,在使用fastq-dump
时遇到的一个报错:
$ fastq-dump --split-3 A549-DRR016695.1
2019-11-30T16:49:38 fastq-dump.2.9.6 err: path not found while searching dynamic library within file system module - failed to open SRA manager
=============================================================
An error occurred during processing.
A report was generated into the file '/work/xxxxx/ncbi_error_report.xml'.
If the problem persists, you may consider sending the file
to 'sra-tools@ncbi.nlm.nih.gov' for assistance.
=============================================================
同样fasterq-dump
也无法正常使用:
$ fasterq-dump --split-3 A549-DRR016695.1
2019-11-30T16:50:19 fasterq-dump.2.9.6 err: cmn_iter.c cmn_get_acc_type( 'A549-DRR016695.1' ).VDBManagerMakeRead() -> RC(rcFS,rcDylib,rcSearching,rcPath,rcNotFound)
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